IL_4V87_203

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V87_203 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1358

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V87|1|CA|G|409
4V87|1|CA|G|410
4V87|1|CA|A|411
4V87|1|CA|A|412
4V87|1|CA|G|413
4V87|1|CA|A|414
4V87|1|CA|A|415
4V87|1|CA|G|416
*
4V87|1|CA|U|427
4V87|1|CA|G|428
4V87|1|CA|U|429
4V87|1|CA|A|430
4V87|1|CA|A|431
4V87|1|CA|A|432
4V87|1|CA|C|433

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CG

30S RIBOSOMAL PROTEIN S4