IL_4V87_293

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

4V87|1|DA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V87_293 not in the Motif Atlas

Homologous match to IL_7RQB_042

Geometric discrepancy: 0.3174

The information below is about IL_7RQB_042

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.4

Basepair signature

cWW-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4V87|1|DA|C|1043
4V87|1|DA|G|1044
4V87|1|DA|A|1045
4V87|1|DA|A|1046
4V87|1|DA|G|1047
4V87|1|DA|A|1048
4V87|1|DA|C|1049
4V87|1|DA|A|1050
4V87|1|DA|G|1051
*
4V87|1|DA|U|1108
4V87|1|DA|C|1109
4V87|1|DA|G|1110
4V87|1|DA|A|1111
4V87|1|DA|G|1112

Current chains

Chain DA

RNA (2909-MER)

Nearby chains

Chain DH

50S ribosomal protein L6