IL_4V87_339

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAG*CGGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V87_339 not in the Motif Atlas

Homologous match to IL_4WF9_086

Geometric discrepancy: 0.3476

The information below is about IL_4WF9_086

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_14250.1

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

10

Unit IDs

4V87|1|DA|C|2297
4V87|1|DA|A|2298
4V87|1|DA|G|2299
*
4V87|1|DA|C|2317
4V87|1|DA|G|2318
4V87|1|DA|G|2319
4V87|1|DA|A|2320
4V87|1|DA|G|2321

Current chains

Chain DA

RNA (2909-MER)

Nearby chains

Chain D3

50S ribosomal protein L27

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DG

50S ribosomal protein L5

Chain DQ

50S ribosomal protein L18