IL_4V87_357
3D structure
- PDB id
- 4V87 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure analysis of ribosomal decoding.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUAAC*GGAAGC
- Length
- 12 nucleotides
- Bulged bases
- 4V87|1|DA|A|2765
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V87_357 not in the Motif Atlas
- Homologous match to IL_7RQB_107
- Geometric discrepancy: 0.0902
- The information below is about IL_7RQB_107
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.5
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V87|1|DA|G|2737
4V87|1|DA|A|2738
4V87|1|DA|U|2739
4V87|1|DA|A|2740
4V87|1|DA|A|2741
4V87|1|DA|C|2742
*
4V87|1|DA|G|2762
4V87|1|DA|G|2763
4V87|1|DA|A|2764
4V87|1|DA|A|2765
4V87|1|DA|G|2766
4V87|1|DA|C|2767
Current chains
- Chain DA
- RNA (2909-MER)
Nearby chains
- Chain DH
- 50S ribosomal protein L6
- Chain DM
- 50S ribosomal protein L13
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