Loop IL_4V87

3D structure

PDB id: 4V87 (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure analysis of ribosomal decoding.
Experimental method: X-RAY DIFFRACTION
Resolution: 3.1 Å

Loop

Sequence: CGGGGUGGAGCAGCCCGGUAGCUCGUCG*CGAAGGUCGUCGGUUCAAAUCCGGCCCCCG
Length: 58 nucleotides
Bulged bases: 4V87|1|BD|C|16, 4V87|1|BD|C|17, 4V87|1|BD|C|18, 4V87|1|BD|U|21, 4V87|1|BD|U|48
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V87|1|BD|C|3
4V87|1|BD|G|4
4V87|1|BD|G|5
4V87|1|BD|G|6
4V87|1|BD|G|7
4V87|1|BD|U|8
4V87|1|BD|G|9
4V87|1|BD|G|10
4V87|1|BD|A|11
4V87|1|BD|G|12
4V87|1|BD|C|13
4V87|1|BD|A|14
4V87|1|BD|G|15
4V87|1|BD|C|16
4V87|1|BD|C|17
4V87|1|BD|C|18
4V87|1|BD|G|19
4V87|1|BD|G|20
4V87|1|BD|U|21
4V87|1|BD|A|22
4V87|1|BD|G|23
4V87|1|BD|C|24
4V87|1|BD|U|25
4V87|1|BD|C|26
4V87|1|BD|G|27
4V87|1|BD|U|28
4V87|1|BD|C|29
4V87|1|BD|G|30
*
4V87|1|BD|C|42
4V87|1|BD|G|43
4V87|1|BD|A|44
4V87|1|BD|A|45
4V87|1|BD|G|46
4V87|1|BD|G|47
4V87|1|BD|U|48
4V87|1|BD|C|49
4V87|1|BD|G|50
4V87|1|BD|U|51
4V87|1|BD|C|52
4V87|1|BD|G|53
4V87|1|BD|G|54
4V87|1|BD|U|55
4V87|1|BD|U|56
4V87|1|BD|C|57
4V87|1|BD|A|58
4V87|1|BD|A|59
4V87|1|BD|A|60
4V87|1|BD|U|61
4V87|1|BD|C|62
4V87|1|BD|C|63
4V87|1|BD|G|64
4V87|1|BD|G|65
4V87|1|BD|C|66
4V87|1|BD|C|67
4V87|1|BD|C|68
4V87|1|BD|C|69
4V87|1|BD|C|70
4V87|1|BD|G|71

Current chains

Chain BD: TRNA-FMET

Nearby chains

Chain A6: 50S ribosomal protein L33
Chain AA: Large subunit ribosomal RNA; LSU rRNA
Chain BA: Small subunit ribosomal RNA; SSU rRNA
Chain BJ: 30S RIBOSOMAL PROTEIN S7
Chain BN: 30S RIBOSOMAL PROTEIN S11

IL_4V87_374