IL_4V87_379

3D structure

PDB id

4V87 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure analysis of ribosomal decoding.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCCCCAAGUC*GCG

Length

13 nucleotides

Bulged bases

4V87|1|DA|U|1012

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V87|1|DA|C|1004
4V87|1|DA|C|1005
4V87|1|DA|C|1006
4V87|1|DA|C|1007
4V87|1|DA|C|1008
4V87|1|DA|A|1009
4V87|1|DA|A|1010
4V87|1|DA|G|1011
4V87|1|DA|U|1012
4V87|1|DA|C|1013
*
4V87|1|DA|G|1149
4V87|1|DA|C|1150
4V87|1|DA|G|1151

Current chains

Chain DA

RNA (2909-MER)

Nearby chains

Chain D1

50S ribosomal protein L20

Chain DM

50S ribosomal protein L13