IL_4V88_007

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

4V88|1|A1|U|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_007 not in the Motif Atlas

Homologous match to IL_8C3A_007

Geometric discrepancy: 0.0547

The information below is about IL_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V88|1|A1|A|123
4V88|1|A1|U|124
*
4V88|1|A1|A|144
4V88|1|A1|G|145
4V88|1|A1|U|146
4V88|1|A1|U|147
4V88|1|A1|G|148
4V88|1|A1|U|149

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain BG

60S ribosomal protein L8-A

Chain BN

60S ribosomal protein L15-A