IL_4V88_015

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGAAAU*ACGGAUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_015 not in the Motif Atlas

Homologous match to IL_5TBW_015

Geometric discrepancy: 0.0361

The information below is about IL_5TBW_015

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.7

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V88|1|A1|G|404
4V88|1|A1|U|405
4V88|1|A1|G|406
4V88|1|A1|A|407
4V88|1|A1|A|408
4V88|1|A1|A|409
4V88|1|A1|U|410
*
4V88|1|A4|A|13
4V88|1|A4|C|14
4V88|1|A4|G|15
4V88|1|A4|G|16
4V88|1|A4|A|17
4V88|1|A4|U|18
4V88|1|A4|C|19

Current chains

Chain A1

25S rRNA

Chain A4

5.8S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4-A

Chain BP

60S ribosomal protein L17-A

Chain Be

60S ribosomal protein L32