IL_4V88_022
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GUUUG*CAUAC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V88_022 not in the Motif Atlas
- Homologous match to IL_5TBW_022
- Geometric discrepancy: 0.0411
- The information below is about IL_5TBW_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74284.1
- Basepair signature
- cWW-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V88|1|A1|G|680
4V88|1|A1|U|681
4V88|1|A1|U|682
4V88|1|A1|U|683
4V88|1|A1|G|684
*
4V88|1|A1|C|696
4V88|1|A1|A|697
4V88|1|A1|U|698
4V88|1|A1|A|699
4V88|1|A1|C|700
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain BC
- 60S ribosomal protein L4-A
- Chain BL
- 60S ribosomal protein L13-A
- Chain BN
- 60S ribosomal protein L15-A
- Chain Ba
- 60S ribosomal protein L28
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