IL_4V88_032

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

4V88|1|A1|U|874

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_032 not in the Motif Atlas

Homologous match to IL_5TBW_032

Geometric discrepancy: 0.052

The information below is about IL_5TBW_032

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4V88|1|A1|C|873
4V88|1|A1|U|874
4V88|1|A1|G|875
*
4V88|1|A1|C|886
4V88|1|A1|G|887

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BB

60S ribosomal protein L3

Chain Bj

60S ribosomal protein L37-A