IL_4V88_043

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

4V88|1|A1|C|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_043 not in the Motif Atlas

Homologous match to IL_8P9A_271

Geometric discrepancy: 0.3504

The information below is about IL_8P9A_271

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11415.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

4V88|1|A1|U|1014
4V88|1|A1|U|1015
4V88|1|A1|C|1016
4V88|1|A1|C|1017
4V88|1|A1|G|1018
*
4V88|1|A1|U|1034
4V88|1|A1|G|1035
4V88|1|A1|A|1036

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Ah

Suppressor protein STM1

Chain BJ

60S ribosomal protein L11-A