IL_4V88_050
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AUA*UU
- Length
- 5 nucleotides
- Bulged bases
- 4V88|1|A1|U|1181
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V88_050 not in the Motif Atlas
- Geometric match to IL_5TBW_050
- Geometric discrepancy: 0.0578
- The information below is about IL_5TBW_050
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
4V88|1|A1|A|1180
4V88|1|A1|U|1181
4V88|1|A1|A|1182
*
4V88|1|A1|U|1324
4V88|1|A1|U|1325
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain BF
- 60S ribosomal protein L7-A
- Chain BM
- 60S ribosomal protein L14-A
- Chain BO
- 60S ribosomal protein L16-A, 60S ribosomal protein L16-B
- Chain BS
- 60S ribosomal protein L20-A
- Chain Bf
- 60S ribosomal protein L33-A
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