IL_4V88_056

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

4V88|1|A1|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_056 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.2562

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

4V88|1|A1|G|1262
4V88|1|A1|A|1263
4V88|1|A1|G|1264
4V88|1|A1|U|1265
4V88|1|A1|G|1266
*
4V88|1|A1|C|1275
4V88|1|A1|U|1276
4V88|1|A1|C|1277

Current chains

Chain A1

25S rRNA

Nearby chains