IL_4V88_058

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAG*CG

Length

5 nucleotides

Bulged bases

4V88|1|A1|A|1386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_058 not in the Motif Atlas

Homologous match to IL_5TBW_058

Geometric discrepancy: 0.0591

The information below is about IL_5TBW_058

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

4V88|1|A1|C|1385
4V88|1|A1|A|1386
4V88|1|A1|G|1387
*
4V88|1|A1|C|1420
4V88|1|A1|G|1421

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain BC

60S ribosomal protein L4-A

Chain BE

60S ribosomal protein L6-A

Chain Be

60S ribosomal protein L32