IL_4V88_059

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGACGAAG*UCGAA

Length

13 nucleotides

Bulged bases

4V88|1|A1|C|1391

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_059 not in the Motif Atlas

Homologous match to IL_5TBW_059

Geometric discrepancy: 0.037

The information below is about IL_5TBW_059

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.5

Basepair signature

cWW-cWW-tSS-tSH-tHS-cWW-tHS

Number of instances in this motif group

32

Unit IDs

4V88|1|A1|U|1388
4V88|1|A1|G|1389
4V88|1|A1|A|1390
4V88|1|A1|C|1391
4V88|1|A1|G|1392
4V88|1|A1|A|1393
4V88|1|A1|A|1394
4V88|1|A1|G|1395
*
4V88|1|A1|U|1415
4V88|1|A1|C|1416
4V88|1|A1|G|1417
4V88|1|A1|A|1418
4V88|1|A1|A|1419

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain BC

60S ribosomal protein L4-A

Chain BE

60S ribosomal protein L6-A

Chain BP

60S ribosomal protein L17-A

Chain BY

60S ribosomal protein L26-A

Chain Be

60S ribosomal protein L32