IL_4V88_081

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GG*CAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_081 not in the Motif Atlas

Homologous match to IL_5TBW_080

Geometric discrepancy: 0.1712

The information below is about IL_5TBW_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74125.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4V88|1|A1|G|1947
4V88|1|A1|G|1948
*
4V88|1|A1|C|2098
4V88|1|A1|A|2099
4V88|1|A1|A|2100
4V88|1|A1|C|2101

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BR

60S ribosomal protein L19-A