IL_4V88_088

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

4V88|1|A1|U|2205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_088 not in the Motif Atlas

Geometric match to IL_5TBW_086

Geometric discrepancy: 0.1564

The information below is about IL_5TBW_086

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4V88|1|A1|C|2204
4V88|1|A1|U|2205
4V88|1|A1|G|2206
*
4V88|1|A1|C|2237
4V88|1|A1|G|2238

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain BA

60S ribosomal protein L2-A