IL_4V88_096

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

4V88|1|A1|A|2808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_096 not in the Motif Atlas

Homologous match to IL_5TBW_094

Geometric discrepancy: 0.0415

The information below is about IL_5TBW_094

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

4V88|1|A1|G|2412
4V88|1|A1|A|2413
*
4V88|1|A1|U|2807
4V88|1|A1|A|2808
4V88|1|A1|C|2809
4V88|1|A1|C|2810

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BA

60S ribosomal protein L2-A

Chain BN

60S ribosomal protein L15-A