IL_4V88_097

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

4V88|1|A1|G|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_097 not in the Motif Atlas

Homologous match to IL_5TBW_095

Geometric discrepancy: 0.0478

The information below is about IL_5TBW_095

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

4V88|1|A1|U|2423
4V88|1|A1|A|2424
4V88|1|A1|G|2425
*
4V88|1|A1|U|2604
4V88|1|A1|G|2605
4V88|1|A1|G|2606
4V88|1|A1|G|2607

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BA

60S ribosomal protein L2-A

Chain BN

60S ribosomal protein L15-A

Chain Bo

60S ribosomal protein L42-A