IL_4V88_110

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

4V88|1|A1|A|2941, 4V88|1|A1|C|2942

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_110 not in the Motif Atlas

Homologous match to IL_5TBW_109

Geometric discrepancy: 0.0348

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V88|1|A1|C|2881
4V88|1|A1|U|2882
*
4V88|1|A1|A|2940
4V88|1|A1|A|2941
4V88|1|A1|C|2942
4V88|1|A1|G|2943

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BB

60S ribosomal protein L3

Chain BO

60S ribosomal protein L16-A, 60S ribosomal protein L16-B

Chain BV

60S ribosomal protein L23-A