IL_4V88_112

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

4V88|1|A1|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_112 not in the Motif Atlas

Homologous match to IL_5TBW_111

Geometric discrepancy: 0.0665

The information below is about IL_5TBW_111

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

4V88|1|A1|U|2891
4V88|1|A1|A|2892
*
4V88|1|A1|U|2909
4V88|1|A1|A|2910
4V88|1|A1|A|2911
4V88|1|A1|G|2912

Current chains

Chain A1

25S rRNA

Nearby chains

Chain BH

60S ribosomal protein L9-A

Chain BO

60S ribosomal protein L16-A, 60S ribosomal protein L16-B

Chain Bm

60S ribosomal protein L40