IL_4V88_123

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_123 not in the Motif Atlas

Homologous match to IL_5TBW_122

Geometric discrepancy: 0.08

The information below is about IL_5TBW_122

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V88|1|A1|A|3168
4V88|1|A1|U|3169
4V88|1|A1|A|3170
*
4V88|1|A1|U|3280
4V88|1|A1|U|3281
4V88|1|A1|U|3282

Current chains

Chain A1

25S rRNA

Nearby chains

Chain Bf

60S ribosomal protein L33-A