IL_4V88_160
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UUUCGA*UG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V88_160 not in the Motif Atlas
- Homologous match to IL_4V88_403
- Geometric discrepancy: 0.3408
- The information below is about IL_4V88_403
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85724.1
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 2
Unit IDs
4V88|1|A2|U|318
4V88|1|A2|U|319
4V88|1|A2|U|320
4V88|1|A2|C|321
4V88|1|A2|G|322
4V88|1|A2|A|323
*
4V88|1|A2|U|345
4V88|1|A2|G|346
Current chains
- Chain A2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AI
- 40S ribosomal protein S8-A
- Chain AL
- 40S ribosomal protein S11-A
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