IL_4V88_179

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_179 not in the Motif Atlas

Homologous match to IL_4V88_424

Geometric discrepancy: 0.217

The information below is about IL_4V88_424

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V88|1|A2|U|748
4V88|1|A2|U|749
4V88|1|A2|U|750
*
4V88|1|A2|A|799
4V88|1|A2|U|800
4V88|1|A2|G|801

Current chains

Chain A2

18S RIBOSOMAL RNA

Nearby chains

Chain AE

40S ribosomal protein S4-A

Chain AH

40S ribosomal protein S7-A

Chain AL

40S ribosomal protein S11-A

Chain AW

40S ribosomal protein S22-A