IL_4V88_182

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUC*GGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_182 not in the Motif Atlas

Geometric match to IL_4KQ0_005

Geometric discrepancy: 0.1706

The information below is about IL_4KQ0_005

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.5

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

55

Unit IDs

4V88|1|A2|U|825
4V88|1|A2|U|826
4V88|1|A2|C|827
*
4V88|1|A2|G|845
4V88|1|A2|G|846
4V88|1|A2|A|847

Current chains

Chain A2

18S RIBOSOMAL RNA

Nearby chains

Chain AL

40S ribosomal protein S11-A