IL_4V88_188
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 4V88|1|A2|G|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V88_188 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.3633
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
4V88|1|A2|U|893
4V88|1|A2|U|894
4V88|1|A2|G|895
4V88|1|A2|U|896
4V88|1|A2|C|897
4V88|1|A2|A|898
4V88|1|A2|G|899
*
4V88|1|A2|C|910
4V88|1|A2|U|911
4V88|1|A2|U|912
4V88|1|A2|G|913
4V88|1|A2|G|914
4V88|1|A2|A|915
4V88|1|A2|U|916
4V88|1|A2|U|917
4V88|1|A2|U|918
4V88|1|A2|A|919
Current chains
- Chain A2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AB
- 40S ribosomal protein S1-A
- Chain AO
- 40S ribosomal protein S14-A
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