IL_4V88_211

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUG*UUAUC

Length

8 nucleotides

Bulged bases

4V88|1|A2|U|1370, 4V88|1|A2|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_211 not in the Motif Atlas

Homologous match to IL_4V88_457

Geometric discrepancy: 0.2355

The information below is about IL_4V88_457

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V88|1|A2|G|1352
4V88|1|A2|U|1353
4V88|1|A2|G|1354
*
4V88|1|A2|U|1369
4V88|1|A2|U|1370
4V88|1|A2|A|1371
4V88|1|A2|U|1372
4V88|1|A2|C|1373

Current chains

Chain A2

18S RIBOSOMAL RNA

Nearby chains

Chain AQ

40S ribosomal protein S16-A

Chain AT

40S ribosomal protein S19-A

Chain AU

40S ribosomal protein S20