IL_4V88_221

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_221 not in the Motif Atlas

Homologous match to IL_4V88_467

Geometric discrepancy: 0.1302

The information below is about IL_4V88_467

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V88|1|A2|U|1650
4V88|1|A2|A|1651
4V88|1|A2|C|1652
*
4V88|1|A2|G|1748
4V88|1|A2|A|1749
4V88|1|A2|A|1750

Current chains

Chain A2

18S RIBOSOMAL RNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain AX

40S ribosomal protein S23-A

Chain Bn

60S ribosomal protein L41-A