IL_4V88_241
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UGAAU*GAAUUCCGUGAA
- Length
- 17 nucleotides
- Bulged bases
- 4V88|1|A4|C|84, 4V88|1|A4|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V88_241 not in the Motif Atlas
- Geometric match to IL_5TBW_147
- Geometric discrepancy: 0.1134
- The information below is about IL_5TBW_147
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_39287.1
- Basepair signature
- cWW-L-R-L-tSH-tSS-L-tHS-cWW-L-L
- Number of instances in this motif group
- 1
Unit IDs
4V88|1|A4|U|69
4V88|1|A4|G|70
4V88|1|A4|A|71
4V88|1|A4|A|72
4V88|1|A4|U|73
*
4V88|1|A4|G|78
4V88|1|A4|A|79
4V88|1|A4|A|80
4V88|1|A4|U|81
4V88|1|A4|U|82
4V88|1|A4|C|83
4V88|1|A4|C|84
4V88|1|A4|G|85
4V88|1|A4|U|86
4V88|1|A4|G|87
4V88|1|A4|A|88
4V88|1|A4|A|89
Current chains
- Chain A4
- 5.8S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain A8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BY
- 60S ribosomal protein L26-A
- Chain Bh
- 60S ribosomal protein L35-A
- Chain Bj
- 60S ribosomal protein L37-A
- Chain Dh
- 60S ribosomal protein L35-A
Coloring options: