IL_4V88_242

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAC,GUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V88_242 not in the Motif Atlas

Geometric match to IL_4TS2_003

Geometric discrepancy: 0.2066

The information below is about IL_4TS2_003

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4V88|1|A5|G|5
4V88|1|A5|A|6
4V88|1|A5|C|7
*
4V88|1|A8|G|152
4V88|1|A8|U|153
4V88|1|A8|C|154

Current chains

Chain A5

25S rRNA

Chain A8

5.8S rRNA

Nearby chains

Chain DG

60S ribosomal protein L8-A

Chain DN

60S ribosomal protein L15-A