IL_4V88_252
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UGGGGC*GUUCUUUGUA
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65619.1
- Basepair signature
- cWW-R-R-R-R-bif-cWW-cWW-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V88|1|A5|U|169
4V88|1|A5|G|170
4V88|1|A5|G|171
4V88|1|A5|G|172
4V88|1|A5|G|173
4V88|1|A5|C|174
*
4V88|1|A5|G|244
4V88|1|A5|U|245
4V88|1|A5|U|246
4V88|1|A5|C|247
4V88|1|A5|U|248
4V88|1|A5|U|249
4V88|1|A5|U|250
4V88|1|A5|G|251
4V88|1|A5|U|252
4V88|1|A5|A|253
Current chains
- Chain A5
- 25S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain BL
- 60S ribosomal protein L13-A
- Chain DG
- 60S ribosomal protein L8-A
- Chain DL
- 60S ribosomal protein L13-A
- Chain Dh
- 60S ribosomal protein L35-A
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