IL_4V88_253

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUC*GAGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64585.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

14

Unit IDs

4V88|1|A5|U|177
4V88|1|A5|U|178
4V88|1|A5|C|179
*
4V88|1|A5|G|237
4V88|1|A5|A|238
4V88|1|A5|G|239
4V88|1|A5|U|240
4V88|1|A5|G|241

Current chains

Chain A5

25S rRNA

Nearby chains

Chain A1

Large subunit ribosomal RNA; LSU rRNA

Chain A8

5.8S ribosomal RNA; 5.8S rRNA

Chain DL

60S ribosomal protein L13-A

Chain Dh

60S ribosomal protein L35-A

Chain Dj

60S ribosomal protein L37-A