IL_4V88_256
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 4V88|1|A5|A|398, 4V88|1|A5|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_45805.1
- Basepair signature
- cWW-tSS-tHH-cSW-bif-tSH-tWH-R-R-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V88|1|A5|G|376
4V88|1|A5|A|377
4V88|1|A5|A|378
4V88|1|A5|C|379
*
4V88|1|A5|G|390
4V88|1|A5|A|391
4V88|1|A5|G|392
4V88|1|A5|U|393
4V88|1|A5|G|394
4V88|1|A5|A|395
4V88|1|A5|A|396
4V88|1|A5|A|397
4V88|1|A5|A|398
4V88|1|A5|A|399
4V88|1|A5|G|400
4V88|1|A5|U|401
4V88|1|A5|A|402
4V88|1|A5|C|403
Current chains
- Chain A5
- 25S rRNA
Nearby chains
- Chain A8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain DP
- 60S ribosomal protein L17-A
- Chain DY
- 60S ribosomal protein L26-A
- Chain Dl
- 60S ribosomal protein L39
Coloring options: