IL_4V88_259

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGACAUGGCUGGG*CAUAAU

Length

19 nucleotides

Bulged bases

4V88|1|A5|U|620

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V88|1|A5|A|436
4V88|1|A5|G|437
4V88|1|A5|A|438
4V88|1|A5|C|439
4V88|1|A5|A|440
4V88|1|A5|U|441
4V88|1|A5|G|442
4V88|1|A5|G|443
4V88|1|A5|C|491
4V88|1|A5|U|492
4V88|1|A5|G|493
4V88|1|A5|G|494
4V88|1|A5|G|495
*
4V88|1|A5|C|618
4V88|1|A5|A|619
4V88|1|A5|U|620
4V88|1|A5|A|621
4V88|1|A5|A|622
4V88|1|A5|U|623

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DE

60S ribosomal protein L6-A

Chain De

60S ribosomal protein L32

Chain Df

60S ribosomal protein L33-A