IL_4V88_262

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

4V88|1|A5|U|534, 4V88|1|A5|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_56358.1

Basepair signature

cWW-cWW-bif-tHW-cWH-cSH-cWH-cSH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V88|1|A5|G|531
4V88|1|A5|A|532
4V88|1|A5|A|533
4V88|1|A5|U|534
4V88|1|A5|G|535
4V88|1|A5|U|536
4V88|1|A5|A|537
4V88|1|A5|G|538
*
4V88|1|A5|U|553
4V88|1|A5|A|554
4V88|1|A5|U|555
4V88|1|A5|U|556
4V88|1|A5|A|557
4V88|1|A5|U|558
4V88|1|A5|A|559
4V88|1|A5|G|560
4V88|1|A5|C|561

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DM

60S ribosomal protein L14-A

Chain DS

60S ribosomal protein L20-A

Chain Dq

60S acidic ribosomal protein P0