IL_4V88_264

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUUUG*CAUAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20897.1

Basepair signature

cWW-L-R-R-R-L-L-cWW

Number of instances in this motif group

2

Unit IDs

4V88|1|A5|G|680
4V88|1|A5|U|681
4V88|1|A5|U|682
4V88|1|A5|U|683
4V88|1|A5|G|684
*
4V88|1|A5|C|696
4V88|1|A5|A|697
4V88|1|A5|U|698
4V88|1|A5|A|699
4V88|1|A5|C|700

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DC

60S ribosomal protein L4-A

Chain DL

60S ribosomal protein L13-A

Chain DN

60S ribosomal protein L15-A

Chain Da

60S ribosomal protein L28