IL_4V88_268

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85140.1

Basepair signature

cWW-cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

11

Unit IDs

4V88|1|A5|C|758
4V88|1|A5|U|759
4V88|1|A5|G|760
4V88|1|A5|A|761
4V88|1|A5|U|762
4V88|1|A5|G|763
*
4V88|1|A5|C|768
4V88|1|A5|G|769
4V88|1|A5|G|770
4V88|1|A5|A|771
4V88|1|A5|U|772
4V88|1|A5|G|773

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DL

60S ribosomal protein L13-A

Chain Da

60S ribosomal protein L28

Chain Do

60S ribosomal protein L42-A