IL_4V88_270
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 4V88|1|A5|A|933, 4V88|1|A5|G|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28684.1
- Basepair signature
- cWW-R-tHW-tHW-tWW-cWW
- Number of instances in this motif group
- 12
Unit IDs
4V88|1|A5|G|805
4V88|1|A5|A|806
4V88|1|A5|A|807
4V88|1|A5|A|808
4V88|1|A5|G|809
*
4V88|1|A5|C|931
4V88|1|A5|U|932
4V88|1|A5|A|933
4V88|1|A5|G|934
4V88|1|A5|U|935
4V88|1|A5|A|936
4V88|1|A5|G|937
4V88|1|A5|C|938
Current chains
- Chain A5
- 25S rRNA
Nearby chains
- Chain DC
- 60S ribosomal protein L4-A
- Chain DL
- 60S ribosomal protein L13-A
- Chain DN
- 60S ribosomal protein L15-A
- Chain Da
- 60S ribosomal protein L28
- Chain Dj
- 60S ribosomal protein L37-A
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