IL_4V88_276

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGG*UAAUC

Length

8 nucleotides

Bulged bases

4V88|1|A5|G|908, 4V88|1|A5|A|920, 4V88|1|A5|A|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_03097.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

4V88|1|A5|G|907
4V88|1|A5|G|908
4V88|1|A5|G|909
*
4V88|1|A5|U|919
4V88|1|A5|A|920
4V88|1|A5|A|921
4V88|1|A5|U|922
4V88|1|A5|C|923

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DA

60S ribosomal protein L2-A

Chain DN

60S ribosomal protein L15-A

Chain DP

60S ribosomal protein L17-A

Chain Dj

60S ribosomal protein L37-A