IL_4V88_281
3D structure
- PDB id
- 4V88 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the eukaryotic ribosome at 3.0 A resolution.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GAGGUAA*UAAAUAU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_56233.1
- Basepair signature
- cWW-cWW-L-R-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V88|1|A5|G|991
4V88|1|A5|A|992
4V88|1|A5|G|993
4V88|1|A5|G|994
4V88|1|A5|U|995
4V88|1|A5|A|996
4V88|1|A5|A|997
*
4V88|1|A5|U|1052
4V88|1|A5|A|1053
4V88|1|A5|A|1054
4V88|1|A5|A|1055
4V88|1|A5|U|1056
4V88|1|A5|A|1057
4V88|1|A5|U|1058
Current chains
- Chain A5
- 25S rRNA
Nearby chains
- Chain A7
- 5S ribosomal RNA; 5S rRNA
- Chain DF
- 60S ribosomal protein L7-A
- Chain DI
- 60S ribosomal protein L10
- Chain DS
- 60S ribosomal protein L20-A
- Chain DT
- 60S ribosomal protein L21-A
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