IL_4V88_294

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUAAG*CUAUA

Length

10 nucleotides

Bulged bases

4V88|1|A5|U|1331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84168.1

Basepair signature

cWW-tWH-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

4V88|1|A5|U|1167
4V88|1|A5|U|1168
4V88|1|A5|A|1169
4V88|1|A5|A|1170
4V88|1|A5|G|1171
*
4V88|1|A5|C|1328
4V88|1|A5|U|1329
4V88|1|A5|A|1330
4V88|1|A5|U|1331
4V88|1|A5|A|1332

Current chains

Chain A5

25S rRNA

Nearby chains

Chain A7

5S ribosomal RNA; 5S rRNA

Chain DF

60S ribosomal protein L7-A

Chain DQ

60S ribosomal protein L18-A

Chain De

60S ribosomal protein L32

Chain Df

60S ribosomal protein L33-A