IL_4V88_295

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGCCGGAA*UA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12582.1

Basepair signature

cWW-L-L-L-cSH-L-cWW

Number of instances in this motif group

17

Unit IDs

4V88|1|A5|U|1173
4V88|1|A5|G|1174
4V88|1|A5|C|1175
4V88|1|A5|C|1176
4V88|1|A5|G|1177
4V88|1|A5|G|1178
4V88|1|A5|A|1179
4V88|1|A5|A|1180
*
4V88|1|A5|U|1325
4V88|1|A5|A|1326

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DF

60S ribosomal protein L7-A

Chain DO

60S ribosomal protein L16-A, 60S ribosomal protein L16-B

Chain DS

60S ribosomal protein L20-A

Chain Df

60S ribosomal protein L33-A