IL_4V88_298

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GACACCACAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

4V88|1|A5|C|1196, 4V88|1|A5|A|1302, 4V88|1|A5|U|1305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83851.1

Basepair signature

cWW-cWW-L-R-R-R-R-R-R-R-R-R-L-L-L-L-L-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V88|1|A5|G|1194
4V88|1|A5|A|1195
4V88|1|A5|C|1196
4V88|1|A5|A|1197
4V88|1|A5|C|1198
4V88|1|A5|C|1199
4V88|1|A5|A|1200
4V88|1|A5|C|1201
4V88|1|A5|A|1202
4V88|1|A5|A|1203
4V88|1|A5|A|1204
4V88|1|A5|A|1205
*
4V88|1|A5|U|1299
4V88|1|A5|G|1300
4V88|1|A5|A|1301
4V88|1|A5|A|1302
4V88|1|A5|A|1303
4V88|1|A5|A|1304
4V88|1|A5|U|1305
4V88|1|A5|G|1306
4V88|1|A5|G|1307
4V88|1|A5|A|1308
4V88|1|A5|U|1309
4V88|1|A5|G|1310
4V88|1|A5|G|1311
4V88|1|A5|C|1312
4V88|1|A5|G|1313
4V88|1|A5|C|1314

Current chains

Chain A5

25S rRNA

Nearby chains

Chain A7

5S ribosomal RNA; 5S rRNA

Chain DB

60S ribosomal protein L3

Chain DF

60S ribosomal protein L7-A

Chain DI

60S ribosomal protein L10

Chain DO

60S ribosomal protein L16-A, 60S ribosomal protein L16-B

Chain Df

60S ribosomal protein L33-A

Chain Dm

60S ribosomal protein L40