IL_4V88_300

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

4V88|1|A5|A|1221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01890.1

Basepair signature

cWW-tSS-L-tSH-tSS-tHS-L-bif-cWW

Number of instances in this motif group

9

Unit IDs

4V88|1|A5|U|1218
4V88|1|A5|C|1219
4V88|1|A5|U|1220
4V88|1|A5|A|1221
4V88|1|A5|G|1222
4V88|1|A5|A|1223
4V88|1|A5|C|1224
4V88|1|A5|A|1225
4V88|1|A5|G|1226
*
4V88|1|A5|C|1283
4V88|1|A5|C|1284
4V88|1|A5|G|1285
4V88|1|A5|A|1286
4V88|1|A5|A|1287

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DS

60S ribosomal protein L20-A

Chain Dq

60S acidic ribosomal protein P0