IL_4V88_310

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAAG*CGAAAG

Length

11 nucleotides

Bulged bases

4V88|1|A5|A|1588, 4V88|1|A5|A|1589

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_95526.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4V88|1|A5|C|1532
4V88|1|A5|U|1533
4V88|1|A5|A|1534
4V88|1|A5|A|1535
4V88|1|A5|G|1536
*
4V88|1|A5|C|1585
4V88|1|A5|G|1586
4V88|1|A5|A|1587
4V88|1|A5|A|1588
4V88|1|A5|A|1589
4V88|1|A5|G|1590

Current chains

Chain A5

25S rRNA

Nearby chains

Chain A8

5.8S ribosomal RNA; 5.8S rRNA

Chain DA

60S ribosomal protein L2-A

Chain Dg

60S ribosomal protein L34-A

Chain Dj

60S ribosomal protein L37-A

Chain Dl

60S ribosomal protein L39