IL_4V88_316

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAU*AGGAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_35765.1

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

58

Unit IDs

4V88|1|A5|U|1645
4V88|1|A5|G|1646
4V88|1|A5|A|1647
4V88|1|A5|A|1648
4V88|1|A5|U|1649
*
4V88|1|A5|A|1806
4V88|1|A5|G|1807
4V88|1|A5|G|1808
4V88|1|A5|A|1809
4V88|1|A5|A|1810

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DA

60S ribosomal protein L2-A

Chain DZ

60S ribosomal protein L27-A

Chain Dg

60S ribosomal protein L34-A