IL_4V88_322

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGGAAUU*GGAGAUG

Length

14 nucleotides

Bulged bases

4V88|1|A5|U|1716, 4V88|1|A5|A|1729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17283.1

Basepair signature

cWW-tSH-tSH-tHS-tSS-L-R-cWW

Number of instances in this motif group

6

Unit IDs

4V88|1|A5|C|1711
4V88|1|A5|G|1712
4V88|1|A5|G|1713
4V88|1|A5|A|1714
4V88|1|A5|A|1715
4V88|1|A5|U|1716
4V88|1|A5|U|1717
*
4V88|1|A5|G|1727
4V88|1|A5|G|1728
4V88|1|A5|A|1729
4V88|1|A5|G|1730
4V88|1|A5|A|1731
4V88|1|A5|U|1732
4V88|1|A5|G|1733

Current chains

Chain A5

25S rRNA

Nearby chains

Chain CN

40S ribosomal protein S13

Chain DR

60S ribosomal protein L19-A

Chain DZ

60S ribosomal protein L27-A

Chain Dc

60S ribosomal protein L30

Chain Dg

60S ribosomal protein L34-A

Chain Dp

60S ribosomal protein L43-A