IL_4V88_338

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

4V88|1|A5|A|2397, 4V88|1|A5|C|2983

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66591.1

Basepair signature

cWW-R-cWW

Number of instances in this motif group

10

Unit IDs

4V88|1|A5|G|2396
4V88|1|A5|A|2397
4V88|1|A5|A|2398
*
4V88|1|A5|U|2981
4V88|1|A5|A|2982
4V88|1|A5|C|2983
4V88|1|A5|C|2984

Current chains

Chain A5

25S rRNA

Nearby chains

Chain DB

60S ribosomal protein L3

Chain DP

60S ribosomal protein L17-A