IL_4V88_342

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUGAAGC*GGGU

Length

11 nucleotides

Bulged bases

4V88|1|A5|G|2522, 4V88|1|A5|G|2585, 4V88|1|A5|G|2586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97868.1

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

5

Unit IDs

4V88|1|A5|A|2520
4V88|1|A5|U|2521
4V88|1|A5|G|2522
4V88|1|A5|A|2523
4V88|1|A5|A|2524
4V88|1|A5|G|2525
4V88|1|A5|C|2526
*
4V88|1|A5|G|2584
4V88|1|A5|G|2585
4V88|1|A5|G|2586
4V88|1|A5|U|2587

Current chains

Chain A5

25S rRNA

Nearby chains

Chain A8

5.8S ribosomal RNA; 5.8S rRNA

Chain DA

60S ribosomal protein L2-A

Chain DG

60S ribosomal protein L8-A

Chain DX

60S ribosomal protein L25