IL_4V88_345

3D structure

PDB id

4V88 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the eukaryotic ribosome at 3.0 A resolution.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAU*AGUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01903.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

28

Unit IDs

4V88|1|A5|C|2666
4V88|1|A5|A|2667
4V88|1|A5|U|2668
*
4V88|1|A5|A|2686
4V88|1|A5|G|2687
4V88|1|A5|U|2688
4V88|1|A5|A|2689
4V88|1|A5|G|2690

Current chains

Chain A5

25S rRNA

Nearby chains

Chain A7

5S ribosomal RNA; 5S rRNA

Chain Ch

Suppressor protein STM1

Chain DD

60S ribosomal protein L5

Chain DJ

60S ribosomal protein L11-A

Chain DT

60S ribosomal protein L21-A